Jeffrey Chuang
I received my BA in Chemistry and Physics from Harvard, followed by a Ph.D. in theoretical physics at MIT , where I studied protein folding, DNA biophysics, and the statistical mechanics of polymer gels with Toyoichi Tanaka, Alexander Grosberg, and Mehran Kardar. I moved into computational biology during my postdoc at UC San Francisco with Prof. Hao Li in the Biochemistry and Biophysics Department. There I trained in the molecular evolution of genomes and gene regulatory processes. I was a junior faculty in the Biology Department at Boston College then joined the Jackson Laboratory for Genomic Medicine. I am a Professor at JAX-GM and hold joint appointments in the UCONN-Health Department of Genetics and Genome Sciences and the University of Connecticut Department of Computer Science and Engineering. I have longtime interests in science communication, developed from my experience as a AAAS Mass Media Fellow, and I enjoy training students in both science and the communication skills that will help them share their work with others. I am Deputy Director of the JAX Cancer Center and a faculty advisor to the Data Analysis Core within JAX Data Sciences.
My research interests are in computational approaches for biological data analysis, especially: development of interpretable methods in deep learning-based tissue image analysis; comparative analysis of tissue imaging modalities such as H&E, CODEX, spatial transcriptomics, and multiplex FISH in cancer; cancer genomics and gene regulation; and the use of patient-derived cancer models to generate clinical trials. My lab’s research has been supported by organizations including the National Institutes of Health, the National Science Foundation, the Department of Defense, and the Hope Foundation.
Links and Social Media

Javad Noorbakhsh
Research Scientist
Scientific consultant

Jill Rubinstein
Senior Research Scientist
joint with Hartford HealthCare Surgical Oncology

Todd Sheridan
Research Scientist
joint with Hartford Hospital Dept of Pathology

Sergii Domanskyi
Research Scientist
joint with JAX Data Science

Ardian Ferraj
Research Scientist
joint with JAX Data Science

Mike Lloyd
Research Scientists
joint with JAX Data Science

Brian White
Research Scientist
joint with JAX Data Science

Hyeon Gu Kang
Postdoctoral Researcher
joint with Olga Anczukow

Jie Zhou
Graduate Student

Sam Liu
Graduate Student

Adam Thiesen
Graduate Student

Natalia Mozzicato
Lab admin
Research Scientists
- Ali Foroughi pour. Next position: Senior scientist at St Jude’s.
- Anuj Srivastava (joint with JAX Computational Sciences). Moderna.
- Brian Sanderson (joint with JAX Computational Sciences). Next position: Senior Associate Research, U. Kansas.
- Xingyi Woo (joint with JAX Computational Sciences). Next position: Senior Principal Investigator, A*Star Bioinformatics Institute.
- Zi-Ming Zhao. Next position: Scientist at Eisai Pharmaceuticals
- Ivan Dotu. Next position: co-Founder, Moirai Biodesign; Research associate at Universidad Pompeu Fabra.
- Hyunsoo Kim. Next position: Research scientist at St. Jude’s
- Emma Ricart Altimiras (research assistant). Next position: graduate student at ETH.
- Krzysztof Grzeda. Next position: bioinformatics consultant.
- Houman Younessi (Visiting professor)
- Jeremy Teitelbaum (Visiting professor, UConn)
Postdoctoral Researchers
- Minji Kim. Next position: Assistant Professor, Department of Computational Medicine and Bioinformatics – University of Michigan.
- Javad Noorbakhsh. Next position: Scientist at the Broad Institute
- Ada Zhan. Next position: research scientist at Memorial Sloan Kettering Cancer Center.
- Kourosh Zarringhalam. Next position: professor in the math department at UMass-Boston.
- Norberto Diaz-Diaz (Visiting Scientist). Next position: professor at Universidad de Pablo de Olavide.
- Hideo Imamura. Next position: scientist at Institute of Tropical Medicine Antwerp and Wellcome Trust Sanger Institute
- Jason Persampieri (Programmer). Next position: software engineer in industry.
- Zehua Chen. Next position: staff scientist at The Broad Institute
- Jessica Lehoczky (Visiting Scientist). Next position: postdoc at Harvard Medical School
Graduate Students
- Patience Mukashyaka. Next position: scientist at Abbvie
- Scott Adamson. Next position: postdoc at NY Genome Center
- Victor Wang (MD/PhD). Next position: residency at Johns Hopkins Medical School
- Fatima Zare (visiting student from UConn). Next position: postdoc at Harvard School of Public Health
- Beryl Royer-Bertrand (visiting masters student). Next position: graduate student at the University of Lausanne.
- Cyril Fournier (visiting masters student). Next position: industry.
- Deborah Ritter. Next position: postdoctoral fellow at Baylor College of Medicine.
- Lu Zhang. Next position: Seven Bridges Genomics.
- Ningtao Shi. Next position: software technology consultant.
Undergraduates
- Jingyan Zhang (Johns Hopkins)
- Ben Mulligan (RIT)
- Shauna Schiffman (HS student. Next position: undergraduate at UC San Diego)
- Amaris Huang (U. Buffalo)
- Shadae Nicholas (U. Miami). Next position: medical student at Cleveland Clinic Lerner College of Medicine
- Tejal Nair (High school student)
- Lisa Frieden (Tufts)
- Lucas Melo. Next position: undergraduate at Columbia
- Briana Kubik (SUNY Geneseo). Next position: PhD student at UMass Amherst
- Xinyu (Sherry) Zhang (U. Conn.)
- Smrithi Raman (high school student). Next position: undergraduate at MIT
- Benjamin Coleman. Next position: undergraduate at Dartmouth.
- Alex Iyabor. Next position: undergraduate at Stanford.
- Kathryn Rankin
- Jared Graveley
- Meredith Shea
- David Gostine
- Robert Bell. Next position: PhD student at UCSF.
- Aleah Fox. Next position: PhD student at UCSF.
- Sean Moon
- Daniel Lees
- Toan Phan
- Alicia Korpi
- Jeffrey Wang (high school student)